Collaborative Proteomics

2020

• Chia, S.B., Elko, E.A., Aboushousha, R., Manuel, A.M., van de Wetering, C., Druso, J.E., van der Velden, J., Seward, D.J., Anathy, V., Irvin, C.G., Lam, Y.W., van der Vliet, A., Janssen-Heininger, Y. (2020) Dysregulation of the glutaredoxin/S-glutathionylation redox axis in lung diseases. Am J Physiol Cell Physiol. 9:4522.

2018

• Wrenn, S. M., Griswold, E. D., Uhl, F. E., Uriarte, J. J., Park, H. E., Coffey, A. L., Dearborn, J. S., Ahlers, B. A., Deng, B., Lam, Y. W., Huston, D. R., Lee, P. C., Wagner, D. E., and Weiss, D. J. (2018) Avian lungs: A novel scaffold for lung bioengineering. PloS one 13, e0198956
• van der Velden, J. L., Wagner, D. E., Lahue, K. G., Abdalla, S. T., Lam, Y. W., Weiss, D. J., and Janssen-Heininger, Y. M. W. (2018) TGF-beta1-induced deposition of provisional extracellular matrix by tracheal basal cells promotes epithelial-to-mesenchymal transition in a JNK1-dependent manner. American journal of physiology. Lung cellular and molecular physiology
• Munson, P., Lam, Y. W., MacPherson, M., Beuschel, S., and Shukla, A. (2018) Mouse serum exosomal proteomic signature in response to asbestos exposure. Journal of cellular biochemistry 119, 6266-6273
• Munson, P., Lam, Y. W., Dragon, J., MacPherson, M., and Shukla, A. (2018) Exosomes from asbestos-exposed cells modulate gene expression in mesothelial cells. FASEB journal : official publication of the Federation of American Societies for Experimental Biology, fj201701291RR
• Heppner, D. E., Dustin, C. M., Liao, C., Hristova, M., Veith, C., Little, A. C., Ahlers, B. A., White, S. L., Deng, B., Lam, Y. W., Li, J., and van der Vliet, A. (2018) Direct cysteine sulfenylation drives activation of the Src kinase. Nature communications 9, 4522
• Burgess, E. J., Hoyt, L. R., Randall, M. J., Mank, M. M., Bivona, J. J., 3rd, Eisenhauer, P. L., Botten, J. W., Ballif, B. A., Lam, Y. W., Wargo, M. J., Boyson, J. E., Ather, J. L., and Poynter, M. E. (2018) Bacterial Lipoproteins Constitute the TLR2-Stimulating Activity of Serum Amyloid A. Journal of immunology 201, 2377-2384

2017

• Toomey, C. G., Weiss, D., Chant, A., Ackerman, M., Ahlers, B. A., Lam, Y.-W., Ricciardi, C., Bourne, D., and Kraemer-Chant, C. M. (2017) Development and Applications of a Calmodulin-Based Fusion Protein System for the Expression and Purification of WW and Zinc Finger Modules. Advances in Biological Chemistry 07, 89-106
• Tacoma, R., Gelsinger, S. L., Lam, Y. W., Scuderi, R. A., Ebenstein, D. B., Heinrichs, A. J., and Greenwood, S. L. (2017) Exploration of the bovine colostrum proteome and effects of heat treatment time on colostrum protein profile. Journal of dairy science 100, 9392-9401
• Tacoma, R., Fields, J., Ebenstein, D. B., Lam, Y. W., and Greenwood, S. L. (2017) Ratio of dietary rumen degradable protein to rumen undegradable protein affects nitrogen partitioning but does not affect the bovine milk proteome produced by mid-lactation Holstein dairy cows. Journal of dairy science 100, 7246-7261
• Liu, Y., Wang, B. X., Li, J., Song, Z. Q., Lu, B. G., Chi, M., Yang, B., Liu, J. B., Lam, Y. W., Li, J. X., and Xu, D. Y. (2017) Salt-response analysis in two rice cultivars at seedling stage. Acta Physiol Plant 39
• Li, S., Diego-Limpin, P. A., Bajrami, B., Keshipeddy, S., Lam, Y. W., Deng, B., Farrokhi, V., McShane, A. J., Nemati, R., Howell, A. R., and Yao, X. (2017) Scaling Proteome-Wide Reactions of Activity-Based Probes. Analytical chemistry 89, 6295-6299
• Lee, C. W., Stankowski, J. N., Chew, J., Cook, C. N., Lam, Y. W., Almeida, S., Carlomagno, Y., Lau, K. F., Prudencio, M., Gao, F. B., Bogyo, M., Dickson, D. W., and Petrucelli, L. (2017) The lysosomal protein cathepsin L is a progranulin protease. Molecular neurodegeneration 12, 55

2016

• Tacoma, R., Fields, J., Ebenstein, D. B., Lam, Y. W., and Greenwood, S. L. (2016) Comparative proteomics dataset of skimmed milk samples from Holstein and Jersey dairy cattle. Data in brief 6, 843-846
• Tacoma, R., Fields, J., Ebenstein, D. B., Lam, Y. W., and Greenwood, S. L. (2016) Characterization of the bovine milk proteome in early-lactation Holstein and Jersey breeds of dairy cows. Journal of proteomics 130, 200-210
• Platz, J., Bonenfant, N. R., Uhl, F. E., Coffey, A. L., McKnight, T., Parsons, C., Sokocevic, D., Borg, Z. D., Lam, Y. W., Deng, B., Fields, J. G., DeSarno, M., Loi, R., Hoffman, A. M., Bianchi, J., Dacken, B., Petersen, T., Wagner, D. E., and Weiss, D. J. (2016) Comparative Decellularization and Recellularization of Wild-Type and Alpha 1,3 Galactosyltransferase Knockout Pig Lungs: A Model for Ex Vivo Xenogeneic Lung Bioengineering and Transplantation. Tissue engineering. Part C, Methods
• Krishnamurthy, S., Deng, B., Del Rio, R., Buchholz, K. R., Treeck, M., Urban, S., Boothroyd, J., Lam, Y. W., and Ward, G. E. (2016) Not a Simple Tether: Binding of Toxoplasma gondii AMA1 to RON2 during Invasion Protects AMA1 from Rhomboid-Mediated Cleavage and Leads to Dephosphorylation of Its Cytosolic Tail. mBio 7

2015

• Smith, K. P., Fields, J. G., Voogt, R. D., Deng, B., Lam, Y. W., and Mintz, K. P. (2015) Alteration in abundance of specific membrane proteins of Aggregatibacter actinomycetemcomitans is attributed to deletion of the inner membrane protein MorC. Proteomics

2014

• Wagner, D. E., Bonenfant, N. R., Sokocevic, D., DeSarno, M. J., Borg, Z. D., Parsons, C. S., Brooks, E. M., Platz, J. J., Khalpey, Z. I., Hoganson, D. M., Deng, B., Lam, Y. W., Oldinski, R. A., Ashikaga, T., and Weiss, D. J. (2014) Three-dimensional scaffolds of acellular human and porcine lungs for high throughput studies of lung disease and regeneration. Biomaterials 35, 2664-2679
• Wagner, D. E., Bonenfant, N. R., Parsons, C. S., Sokocevic, D., Brooks, E. M., Borg, Z. D., Lathrop, M. J., Wallis, J. D., Daly, A. B., Lam, Y. W., Deng, B., DeSarno, M. J., Ashikaga, T., Loi, R., and Weiss, D. J. (2014) Comparative decellularization and recellularization of normal versus emphysematous human lungs. Biomaterials 35, 3281-3297
• Smith, K. P., Fields, J. G., Voogt, R. D., Deng, B., Lam, Y. W., and Mintz, K. P. (2014) The cell envelope proteome of Aggregatibacter actinomycetemcomitans. Molecular oral microbiology
• Hristova, M., Veith, C., Habibovic, A., Lam, Y. W., Deng, B., Geiszt, M., Janssen-Heininger, Y. M., and van der Vliet, A. (2014) Identification of DUOX1-dependent redox signaling through protein S-glutathionylation in airway epithelial cells. Redox biology 2, 436-446
• Cherian, S., Wai Lam, Y., McDaniels, I., Struziak, M., and Delay, R. J. (2014) Estradiol rapidly modulates odor responses in mouse vomeronasal sensory neurons. Neuroscience 269, 43-58

2013

• Syed, K., Porollo, A., Lam, Y. W., Grimmett, P. E., and Yadav, J. S. (2013) CYP63A2, a catalytically versatile fungal P450 monooxygenase capable of oxidizing higher-molecular-weight polycyclic aromatic hydrocarbons, alkylphenols, and alkanes. Applied and environmental microbiology 79, 2692-2702
• Sokocevic, D., Bonenfant, N. R., Wagner, D. E., Borg, Z. D., Lathrop, M. J., Lam, Y. W., Deng, B., Desarno, M. J., Ashikaga, T., Loi, R., Hoffman, A. M., and Weiss, D. J. (2013) The effect of age and emphysematous and fibrotic injury on the re-cellularization of de-cellularized lungs. Biomaterials 34, 3256-3269
• Purmessur, D., Guterl, C. C., Cho, S. K., Cornejo, M. C., Lam, Y. W., Ballif, B. A., Laudier, J. C., and Iatridis, J. C. (2013) Dynamic pressurization induces transition of notochordal cells to a mature phenotype while retaining production of important patterning ligands from development. Arthritis research & therapy 15, R122
• Bonenfant, N. R., Sokocevic, D., Wagner, D. E., Borg, Z. D., Lathrop, M. J., Lam, Y. W., Deng, B., Desarno, M. J., Ashikaga, T., Loi, R., and Weiss, D. J. (2013) The effects of storage and sterilization on de-cellularized and re-cellularized whole lung. Biomaterials 34, 3231-3245

2012

• Lam, H. M., Suresh Babu, C. V., Wang, J., Yuan, Y., Lam, Y. W., Ho, S. M., and Leung, Y. K. (2012) Phosphorylation of human estrogen receptor-beta at serine 105 inhibits breast cancer cell migration and invasion. Molecular and cellular endocrinology 358, 27-35
• Isaac, J., Tarapore, P., Zhang, X., Lam, Y. W., and Ho, S. M. (2012) Site-specific S-nitrosylation of integrin alpha6 increases the extent of prostate cancer cell migration by enhancing integrin beta1 association and weakening adherence to laminin-1. Biochemistry 51, 9689-9697

Prior to 2012

• Syed, K., Porollo, A., Lam, Y. W., and Yadav, J. S. (2011) A fungal P450 (CYP5136A3) capable of oxidizing polycyclic aromatic hydrocarbons and endocrine disrupting alkylphenols: role of Trp(129) and Leu(324). PloS one 6, e28286
• Syed, K., Doddapaneni, H., Subramanian, V., Lam, Y. W., and Yadav, J. S. (2010) Genome-to-function characterization of novel fungal P450 monooxygenases oxidizing polycyclic aromatic hydrocarbons (PAHs). Biochemical and biophysical research communications 399, 492-497
• Lam, Y. W., Yuan, Y., Isaac, J., Babu, C. V., Meller, J., and Ho, S. M. (2010) Comprehensive identification and modified-site mapping of S-nitrosylated targets in prostate epithelial cells. PloS one 5, e9075
• Xiong, S. D., Yu, K., Liu, X. H., Yin, L. H., Kirschenbaum, A., Yao, S., Narla, G., DiFeo, A., Wu, J. B., Yuan, Y., Ho, S. M., Lam, Y. W., and Levine, A. C. (2009) Ribosome-inactivating proteins isolated from dietary bitter melon induce apoptosis and inhibit histone deacetylase-1 selectively in premalignant and malignant prostate cancer cells. International journal of cancer. Journal international du cancer 125, 774-782
• Lam, Y. W., Tam, N. N., Evans, J. E., Green, K. M., Zhang, X., and Ho, S. M. (2008) Differential proteomics in the aging Noble rat ventral prostate. Proteomics 8, 2750-2763
• Lam, Y. W., Mobley, J. A., Evans, J. E., Carmody, J. F., and Ho, S. M. (2005) Mass profiling-directed isolation and identification of a stage-specific serologic protein biomarker of advanced prostate cancer. Proteomics 5, 2927-2938
• Kim, J., Sun, P., Lam, Y. W., Troncoso, P., Sabichi, A. L., Babaian, R. J., Pisters, L. L., Pettaway, C. A., Wood, C. G., Lippman, S. M., McDonnell, T. J., Lieberman, R., Logothetis, C., and Ho, S. M. (2005) Changes in serum proteomic patterns by presurgical alpha-tocopherol and L-selenomethionine supplementation in prostate cancer. Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology 14, 1697-1702
• Mobley, J. A., Lam, Y. W., Lau, K. M., Pais, V. M., L'Esperance, J. O., Steadman, B., Fuster, L. M., Blute, R. D., Taplin, M. E., and Ho, S. M. (2004) Monitoring the serological proteome: the latest modality in prostate cancer detection. The Journal of urology 172, 331-337
• Ng, T. B., Lam, Y. W., and Woo, N. Y. (2003) The immunostimulatory activity and stability of grass carp (Ctenopharyngodon idellus) roe lectin. Veterinary immunology and immunopathology 94, 105-112
• Ng, T. B., Lam, Y. W., and Wang, H. (2003) Calcaelin, a new protein with translation-inhibiting, antiproliferative and antimitogenic activities from the mosaic puffball mushroom Calvatia caelata. Planta medica 69, 212-217
• Mobley, J. A., Leav, I., Zielie, P., Wotkowitz, C., Evans, J., Lam, Y. W., L'Esperance, B. S., Jiang, Z., and Ho, S. M. (2003) Branched fatty acids in dairy and beef products markedly enhance alpha-methylacyl-CoA racemase expression in prostate cancer cells in vitro. Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology 12, 775-783
• Ng, T. B., and Lam, Y. W. (2002) Solenin, a novel protein with translation-inhibiting activity from the traditional Chinese medicinal fish, the sea dragon Solenognathus hardwickii. The international journal of biochemistry & cell biology 34, 625-631
• Ng, T. B., and Lam, Y. W. (2002) Isolation of a novel agglutinin with complex carbohydrate binding specificity from fresh fruiting bodies of the edible mushroom Lyophyllum shimeiji. Biochemical and biophysical research communications 290, 563-568
• Lam, Y. W., and Ng, T. B. (2002) Purification and characterization of a rhamnose-binding lectin with immunoenhancing activity from grass carp (Ctenopharyngodon idellus) ovaries. Protein expression and purification 26, 378-385
• Lam, Y. W., Ng, T. B., and Wang, H. X. (2001) Antiproliferative and antimitogenic activities in a peptide from puffball mushroom Calvatia caelata. Biochemical and biophysical research communications 289, 744-749
• Lam, Y. W., and Ng, T. B. (2001) A monomeric mannose-binding lectin from inner shoots of the edible chive (Allium tuberosum). Journal of protein chemistry 20, 361-366
• Lam, Y. W., Wang, H. X., and Ng, T. B. (2000) A robust cysteine-deficient chitinase-like antifungal protein from inner shoots of the edible chive Allium tuberosum. Biochemical and biophysical research communications 279, 74-80